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Hdac4 histone deacetylase 4 [ Octodon degus (degu) ]

Gene ID: 101578139, updated on 8-Mar-2024

Summary

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Gene symbol
Hdac4
Gene description
histone deacetylase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524665.1 (8621330..8876618, complement)

NW_004524665.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 15 pseudogene Neighboring gene twist family bHLH transcription factor 2 Neighboring gene heterogeneous nuclear ribonucleoprotein C pseudogene Neighboring gene serine-threonine kinase receptor-associated protein pseudogene Neighboring gene olfactory receptor 6B2-like Neighboring gene NADH:ubiquinone oxidoreductase subunit A10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524665 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524665.1 Reference OctDeg1.0 Primary Assembly

    Range
    8621330..8876618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023722244.1 → XP_023578012.1  histone deacetylase 4 isoform X2

    UniProtKB/TrEMBL
    A0A6P6F0R1
    Conserved Domains (2) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:653 → 1061
    HDAC4; Histone deacetylase 4

  2. XM_023722243.1 → XP_023578011.1  histone deacetylase 4 isoform X2

    UniProtKB/TrEMBL
    A0A6P6F0R1
    Conserved Domains (2) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:653 → 1061
    HDAC4; Histone deacetylase 4

  3. XM_023722242.1 → XP_023578010.1  histone deacetylase 4 isoform X2

    UniProtKB/TrEMBL
    A0A6P6F0R1
    Conserved Domains (2) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:653 → 1061
    HDAC4; Histone deacetylase 4

  4. XM_023722245.1 → XP_023578013.1  histone deacetylase 4 isoform X2

    UniProtKB/TrEMBL
    A0A6P6F0R1
    Conserved Domains (2) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:653 → 1061
    HDAC4; Histone deacetylase 4

  5. XM_023722246.1 → XP_023578014.1  histone deacetylase 4 isoform X3

    UniProtKB/TrEMBL
    A0A6P6F0L1
    Conserved Domains (2) summary
    cd10162
    Location:92 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:653 → 1061
    HDAC4; Histone deacetylase 4

  6. XM_023722247.1 → XP_023578015.1  histone deacetylase 4 isoform X5

    UniProtKB/TrEMBL
    A0A6P6F0A1
    Conserved Domains (2) summary
    cd10162
    Location:92 → 153
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:654 → 1057
    HDAC4; Histone deacetylase 4

  7. XM_023722241.1 → XP_023578009.1  histone deacetylase 4 isoform X1

    UniProtKB/TrEMBL
    A0A6P6F0K9
    Conserved Domains (2) summary
    cd10162
    Location:92 → 153
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:654 → 1062
    HDAC4; Histone deacetylase 4

  8. XM_023722251.1 → XP_023578019.1  histone deacetylase 4 isoform X9

    UniProtKB/TrEMBL
    A0A6P6F0L5
    Conserved Domains (2) summary
    cd10162
    Location:64 → 125
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:626 → 1034
    HDAC4; Histone deacetylase 4

  9. XM_023722253.1 → XP_023578021.1  histone deacetylase 4 isoform X10

    UniProtKB/TrEMBL
    A0A6P6F0A6
    Conserved Domains (2) summary
    cd10162
    Location:43 → 104
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:605 → 1013
    HDAC4; Histone deacetylase 4

  10. XM_023722252.1 → XP_023578020.1  histone deacetylase 4 isoform X10

    UniProtKB/TrEMBL
    A0A6P6F0A6
    Conserved Domains (2) summary
    cd10162
    Location:43 → 104
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:605 → 1013
    HDAC4; Histone deacetylase 4

  11. XM_023722248.1 → XP_023578016.1  histone deacetylase 4 isoform X6

    UniProtKB/TrEMBL
    A0A6P6F0G6
    Conserved Domains (2) summary
    cd10162
    Location:92 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:648 → 1056
    HDAC4; Histone deacetylase 4

  12. XM_012516041.2 → XP_012371495.2  histone deacetylase 4 isoform X4

    UniProtKB/TrEMBL
    A0A6P3VCM1
    Conserved Domains (2) summary
    cd10162
    Location:92 → 153
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:649 → 1057
    HDAC4; Histone deacetylase 4

  13. XM_023722250.1 → XP_023578018.1  histone deacetylase 4 isoform X8

    UniProtKB/TrEMBL
    A0A6P6F1B9
    Conserved Domains (2) summary
    cd10162
    Location:91 → 152
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:648 → 1051
    HDAC4; Histone deacetylase 4

  14. XM_023722249.1 → XP_023578017.1  histone deacetylase 4 isoform X7

    UniProtKB/TrEMBL
    A0A6P6F0R4
    Conserved Domains (2) summary
    cd10162
    Location:92 → 153
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cd10006
    Location:649 → 1052
    HDAC4; Histone deacetylase 4
Nucleotide Protein
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