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Clmn calmin [ Octodon degus (degu) ]

Gene ID: 101577864, updated on 8-Mar-2024

Summary

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Gene symbol
Clmn
Gene description
calmin
See related
Ensembl:ENSODEG00000008945
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524646.1 (7497106..7580694, complement)

NW_004524646.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein F-like Neighboring gene dicer 1, ribonuclease III Neighboring gene U2 spliceosomal RNA Neighboring gene GTP-binding nuclear protein Ran-like Neighboring gene spectrin repeat containing nuclear envelope family member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524646 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of meiotic nuclear membrane microtubule tethering complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmin
Names
calmin (calponin-like, transmembrane)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524646.1 Reference OctDeg1.0 Primary Assembly

    Range
    7497106..7580694 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023719686.1 → XP_023575454.1  calmin isoform X2

    UniProtKB/TrEMBL
    A0A6P6ET09
    Related
    ENSODEP00000012059.1, ENSODET00000012224.1
    Conserved Domains (1) summary
    COG5069
    Location:26 → 297
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

  2. XM_004635172.2 → XP_004635229.1  calmin isoform X1

    UniProtKB/TrEMBL
    A0A6P3EZC6
    Related
    ENSODEP00000012058.1, ENSODET00000012223.1
    Conserved Domains (1) summary
    pfam00307
    Location:33 → 134
    CH; Calponin homology (CH) domain

  3. XM_023719687.1 → XP_023575455.1  calmin isoform X3

    UniProtKB/TrEMBL
    A0A6P6ESZ9
    Conserved Domains (1) summary
    COG5069
    Location:26 → 297
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Nucleotide Protein
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