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Sema4f ssemaphorin 4F [ Octodon degus (degu) ]

Gene ID: 101575969, updated on 8-Mar-2024

Summary

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Gene symbol
Sema4f
Gene description
ssemaphorin 4F
See related
Ensembl:ENSODEG00000010194
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524634.1 (5966148..5994531)

NW_004524634.1Genomic Context describing neighboring genes Neighboring gene docking protein 1 Neighboring gene meiosis 1 associated protein Neighboring gene triosephosphate isomerase pseudogene Neighboring gene motile sperm domain-containing protein 3 pseudogene Neighboring gene translationally-controlled tumor protein pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524634 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-4F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524634.1 Reference OctDeg1.0 Primary Assembly

    Range
    5966148..5994531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012515338.2 → XP_012370792.1  semaphorin-4F isoform X1

    UniProtKB/TrEMBL
    A0A6P3VBV7
    Related
    ENSODEP00000013794.1, ENSODET00000013977.1
    Conserved Domains (3) summary
    cd11261
    Location:54 → 513
    Sema_4F; The Sema domain, a protein interacting module, of semaphorin 4F (Sema4F)
    pfam01437
    Location:514 → 565
    PSI; Plexin repeat
    cl11960
    Location:572 → 651
    Ig; Immunoglobulin domain

  2. XM_004634130.3 → XP_004634187.1  semaphorin-4F isoform X2

    UniProtKB/TrEMBL
    A0A6P3FBD5
    Conserved Domains (3) summary
    smart00423
    Location:481 → 532
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:539 → 618
    Ig; Immunoglobulin domain
    cl15693
    Location:54 → 480
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  3. XM_023718452.1 → XP_023574220.1  semaphorin-4F isoform X3

    UniProtKB/TrEMBL
    A0A6P6EPG3
    Conserved Domains (3) summary
    pfam01437
    Location:410 → 461
    PSI; Plexin repeat
    cl11960
    Location:468 → 547
    Ig; Immunoglobulin domain
    cl15693
    Location:1 → 409
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  4. XM_023718453.1 → XP_023574221.1  semaphorin-4F isoform X4

    UniProtKB/TrEMBL
    A0A6P6EPN8
    Conserved Domains (3) summary
    pfam01437
    Location:377 → 428
    PSI; Plexin repeat
    cl11960
    Location:435 → 514
    Ig; Immunoglobulin domain
    cl15693
    Location:1 → 376
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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