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Pcf11 PCF11 cleavage and polyadenylation factor subunit [ Octodon degus (degu) ]

Gene ID: 101575955, updated on 11-Apr-2024

Summary

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Gene symbol
Pcf11
Gene description
PCF11 cleavage and polyadenylation factor subunit
See related
Ensembl:ENSODEG00000003874
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524625.1 (9468164..9498826)

NW_004524625.1Genomic Context describing neighboring genes Neighboring gene ATP synthase subunit gamma, mitochondrial-like Neighboring gene RAB30, member RAS oncogene family Neighboring gene uncharacterized LOC111817121 Neighboring gene ankyrin repeat domain 42 Neighboring gene coiled-coil domain containing 90B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524625 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in termination of RNA polymerase II transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mRNA cleavage factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA cleavage complex 2 protein Pcf11
Names
PCF11, cleavage and polyadenylation factor subunit, homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524625.1 Reference OctDeg1.0 Primary Assembly

    Range
    9468164..9498826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023716732.1 → XP_023572500.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X2

    UniProtKB/TrEMBL
    A0A6P6EJK1
    Conserved Domains (3) summary
    cd03562
    Location:19 → 130
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
    pfam07964
    Location:146 → 458
    Red1; Rec10 / Red1
    pfam09606
    Location:943 → 1326
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  2. XM_004632545.2 → XP_004632602.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X3

    UniProtKB/TrEMBL
    A0A6P3F8A9
    Related
    ENSODEP00000005118.1, ENSODET00000005210.1
    Conserved Domains (1) summary
    cd03562
    Location:19 → 130
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...

  3. XM_023716731.1 → XP_023572499.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X1

    UniProtKB/TrEMBL
    A0A6P6EJK4
    Conserved Domains (3) summary
    cd03562
    Location:19 → 130
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
    pfam07964
    Location:146 → 458
    Red1; Rec10 / Red1
    pfam09606
    Location:943 → 1326
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
Nucleotide Protein
Heading Accession and Version

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