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Sytl3 synaptotagmin like 3 [ Octodon degus (degu) ]

Gene ID: 101573284, updated on 8-Mar-2024

Summary

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Gene symbol
Sytl3
Gene description
synaptotagmin like 3
See related
Ensembl:ENSODEG00000007102
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524600.1 (6014976..6131821)

NW_004524600.1Genomic Context describing neighboring genes Neighboring gene SAP domain-containing ribonucleoprotein pseudogene Neighboring gene dynein light chain Tctex-type 1 Neighboring gene ezrin Neighboring gene 60S ribosomal protein L10a pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524600 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in exocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524600.1 Reference OctDeg1.0 Primary Assembly

    Range
    6014976..6131821
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023712241.1 → XP_023568009.1  synaptotagmin-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P6E6R0
    Conserved Domains (4) summary
    cd04020
    Location:458 → 618
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08392
    Location:317 → 444
    C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
    cl22851
    Location:14 → 133
    PHD_SF; PHD finger superfamily
    cl28890
    Location:70 → 118
    FYVE_like_SF; FYVE domain like superfamily

  2. XM_023712244.1 → XP_023568012.1  synaptotagmin-like protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A6P6E797
    Conserved Domains (4) summary
    cd04020
    Location:390 → 550
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08392
    Location:249 → 376
    C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
    cl22851
    Location:14 → 133
    PHD_SF; PHD finger superfamily
    cl28890
    Location:70 → 118
    FYVE_like_SF; FYVE domain like superfamily

  3. XM_004628514.2 → XP_004628571.1  synaptotagmin-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A6P3F1V1
    Related
    ENSODEP00000009489.1, ENSODET00000009632.1
    Conserved Domains (3) summary
    cd04020
    Location:448 → 608
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08392
    Location:307 → 434
    C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
    cl22851
    Location:60 → 108
    PHD_SF; PHD finger superfamily

  4. XM_023712245.1 → XP_023568013.1  synaptotagmin-like protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A6P6E7K3
    Conserved Domains (4) summary
    cd04020
    Location:380 → 540
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08392
    Location:239 → 366
    C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
    cl22851
    Location:14 → 123
    PHD_SF; PHD finger superfamily
    cl28890
    Location:60 → 108
    FYVE_like_SF; FYVE domain like superfamily

  5. XM_023712246.1 → XP_023568014.1  synaptotagmin-like protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A6P6E6R4
    Conserved Domains (2) summary
    cd04020
    Location:375 → 535
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08392
    Location:234 → 361
    C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3

  6. XM_023712242.1 → XP_023568010.1  synaptotagmin-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A6P6E6R0
    Conserved Domains (4) summary
    cd04020
    Location:458 → 618
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08392
    Location:317 → 444
    C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
    cl22851
    Location:14 → 133
    PHD_SF; PHD finger superfamily
    cl28890
    Location:70 → 118
    FYVE_like_SF; FYVE domain like superfamily

  7. XM_023712243.1 → XP_023568011.1  synaptotagmin-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A6P6E6X3
    Conserved Domains (3) summary
    cd04020
    Location:413 → 573
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08392
    Location:272 → 399
    C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
    cl28890
    Location:25 → 73
    FYVE_like_SF; FYVE domain like superfamily

  8. XM_023712247.1 → XP_023568015.1  synaptotagmin-like protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A6P6E6V7
    Conserved Domains (2) summary
    cd04020
    Location:374 → 534
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08392
    Location:233 → 360
    C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3

  9. XM_023712248.1 → XP_023568016.1  synaptotagmin-like protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A6P6E7A2
    Conserved Domains (2) summary
    cd04020
    Location:252 → 412
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08392
    Location:111 → 238
    C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3

  10. XM_023712249.1 → XP_023568017.1  synaptotagmin-like protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A6P6E7A2
    Conserved Domains (2) summary
    cd04020
    Location:252 → 412
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cd08392
    Location:111 → 238
    C2A_SLP-3; C2 domain first repeat present in Synaptotagmin-like protein 3
Nucleotide Protein
Heading Accession and Version

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