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Khsrp KH-type splicing regulatory protein [ Octodon degus (degu) ]

Gene ID: 101572144, updated on 8-Mar-2024

Summary

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Gene symbol
Khsrp
Gene description
KH-type splicing regulatory protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524626.1 (9950805..9957996, complement)

NW_004524626.1Genomic Context describing neighboring genes Neighboring gene general transcription factor IIF subunit 1 Neighboring gene adenylate kinase isoenzyme 1 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene solute carrier family 25 member 41 Neighboring gene solute carrier family 25 member 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524626 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
far upstream element-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524626.1 Reference OctDeg1.0 Primary Assembly

    Range
    9950805..9957996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004632974.2 → XP_004633031.1  far upstream element-binding protein 2

    UniProtKB/TrEMBL
    A0A6P3F6I9
    Conserved Domains (3) summary
    cd00105
    Location:89 → 151
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    pfam00013
    Location:369 → 434
    KH_1; KH domain
    pfam09005
    Location:614 → 628
    DUF1897; Domain of unknown function (DUF1897)
Nucleotide Protein
Heading Accession and Version

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