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Ncoa6 nuclear receptor coactivator 6 [ Octodon degus (degu) ]

Gene ID: 101566272, updated on 8-Mar-2024

Summary

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Gene symbol
Ncoa6
Gene description
nuclear receptor coactivator 6
See related
Ensembl:ENSODEG00000013455
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524613.1 (5341192..5438858, complement)

NW_004524613.1Genomic Context describing neighboring genes Neighboring gene U6atac minor spliceosomal RNA Neighboring gene tumor protein p53 inducible nuclear protein 2 Neighboring gene RWD domain-containing protein 1 pseudogene Neighboring gene ATP synthase subunit g, mitochondrial pseudogene Neighboring gene gamma-glutamyltransferase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524613 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor coactivator 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524613.1 Reference OctDeg1.0 Primary Assembly

    Range
    5341192..5438858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023714778.1 → XP_023570546.1  nuclear receptor coactivator 6 isoform X5

    UniProtKB/TrEMBL
    A0A6P6EE20
    Conserved Domains (2) summary
    pfam09606
    Location:387 → 809
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam13820
    Location:48 → 189
    Nucleic_acid_bd; Putative nucleic acid-binding region

  2. XM_023714776.1 → XP_023570544.1  nuclear receptor coactivator 6 isoform X3

    UniProtKB/TrEMBL
    A0A6P6EE09
    Conserved Domains (3) summary
    pfam09606
    Location:454 → 871
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam13820
    Location:48 → 189
    Nucleic_acid_bd; Putative nucleic acid-binding region
    cl26464
    Location:1170 → 1593
    Atrophin-1; Atrophin-1 family

  3. XM_023714775.1 → XP_023570543.1  nuclear receptor coactivator 6 isoform X2

    UniProtKB/TrEMBL
    A0A6P6EEW4
    Conserved Domains (4) summary
    pfam09606
    Location:514 → 872
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam13820
    Location:48 → 189
    Nucleic_acid_bd; Putative nucleic acid-binding region
    cl25764
    Location:309 → 576
    PAT1; Topoisomerase II-associated protein PAT1
    cl26464
    Location:1171 → 1594
    Atrophin-1; Atrophin-1 family

  4. XM_023714774.1 → XP_023570542.1  nuclear receptor coactivator 6 isoform X1

    UniProtKB/TrEMBL
    A0A6P6EDW0
    Related
    ENSODEP00000018262.1, ENSODET00000018494.1
    Conserved Domains (3) summary
    pfam09606
    Location:471 → 883
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam13820
    Location:48 → 189
    Nucleic_acid_bd; Putative nucleic acid-binding region
    cl26464
    Location:1182 → 1605
    Atrophin-1; Atrophin-1 family

  5. XM_023714777.1 → XP_023570545.1  nuclear receptor coactivator 6 isoform X4

    UniProtKB/TrEMBL
    A0A6P6EDW5
    Conserved Domains (3) summary
    pfam09606
    Location:313 → 614
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam13820
    Location:48 → 189
    Nucleic_acid_bd; Putative nucleic acid-binding region
    cl26464
    Location:951 → 1374
    Atrophin-1; Atrophin-1 family

  6. XM_023714772.1 → XP_023570540.1  nuclear receptor coactivator 6 isoform X1

    UniProtKB/TrEMBL
    A0A6P6EDW0
    Conserved Domains (3) summary
    pfam09606
    Location:471 → 883
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam13820
    Location:48 → 189
    Nucleic_acid_bd; Putative nucleic acid-binding region
    cl26464
    Location:1182 → 1605
    Atrophin-1; Atrophin-1 family

  7. XM_023714773.1 → XP_023570541.1  nuclear receptor coactivator 6 isoform X1

    UniProtKB/TrEMBL
    A0A6P6EDW0
    Conserved Domains (3) summary
    pfam09606
    Location:471 → 883
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam13820
    Location:48 → 189
    Nucleic_acid_bd; Putative nucleic acid-binding region
    cl26464
    Location:1182 → 1605
    Atrophin-1; Atrophin-1 family

RNA

  1. XR_002821014.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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