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Lin28b lin-28 homolog B [ Octodon degus (degu) ]

Gene ID: 101565522, updated on 8-Mar-2024

Summary

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Gene symbol
Lin28b
Gene description
lin-28 homolog B
See related
Ensembl:ENSODEG00000013568
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524666.1 (4029665..4147301)

NW_004524666.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA61 Neighboring gene HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 Neighboring gene 60S ribosomal protein L13a pseudogene Neighboring gene uncharacterized LOC111818402 Neighboring gene U2 spliceosomal RNA Neighboring gene blood vessel epicardial substance Neighboring gene popeye domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524666 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein lin-28 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524666.1 Reference OctDeg1.0 Primary Assembly

    Range
    4029665..4147301
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004637454.1 → XP_004637511.1  protein lin-28 homolog B isoform X3

    UniProtKB/TrEMBL
    A0A6P3FH20
    Related
    ENSODEP00000018411.1, ENSODET00000018643.1
    Conserved Domains (1) summary
    cd04458
    Location:30 → 100
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

  2. XM_004637453.1 → XP_004637510.1  protein lin-28 homolog B isoform X1

    UniProtKB/TrEMBL
    A0A6P3FDK8
    Conserved Domains (1) summary
    cd04458
    Location:30 → 100
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

  3. XM_012516071.1 → XP_012371525.1  protein lin-28 homolog B isoform X2

    UniProtKB/TrEMBL
    A0A6P3VC59
    Conserved Domains (1) summary
    cd04458
    Location:37 → 107
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
Nucleotide Protein
Heading Accession and Version

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