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Stx12 syntaxin 12 [ Octodon degus (degu) ]

Gene ID: 101564538, updated on 8-Mar-2024

Summary

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Gene symbol
Stx12
Gene description
syntaxin 12
See related
Ensembl:ENSODEG00000004182
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524739.1 (1676289..1715772)

NW_004524739.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 76 member A Neighboring gene 40S ribosomal protein S28 pseudogene Neighboring gene small Cajal body-specific RNA 1 Neighboring gene protein phosphatase 1 regulatory subunit 8 Neighboring gene SUMO-conjugating enzyme UBC9 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524739 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524739.1 Reference OctDeg1.0 Primary Assembly

    Range
    1676289..1715772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004642873.2 → XP_004642930.1  syntaxin-12

    UniProtKB/TrEMBL
    A0A6P3FMJ9
    Related
    ENSODEP00000005537.1, ENSODET00000005636.1
    Conserved Domains (3) summary
    cd00179
    Location:21 → 164
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    cd15876
    Location:181 → 247
    SNARE_syntaxin12; SNARE motif of syntaxin 12
    pfam00804
    Location:26 → 213
    Syntaxin; Syntaxin
Nucleotide Protein
Heading Accession and Version

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