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Usb1 U6 snRNA biogenesis phosphodiesterase 1 [ Octodon degus (degu) ]

Gene ID: 101563860, updated on 8-Mar-2024

Summary

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Gene symbol
Usb1
Gene description
U6 snRNA biogenesis phosphodiesterase 1
See related
Ensembl:ENSODEG00000016214
Gene type
protein coding
RefSeq status
MODEL
Organism
Octodon degus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Octodontidae; Octodon
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current OctDeg1.0 (GCF_000260255.1) Unplaced Scaffold NW_004524587.1 (25858601..25869788, complement)

NW_004524587.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 20 Neighboring gene matrix metallopeptidase 15 Neighboring gene zinc finger protein 319 Neighboring gene sperm microtubule inner protein 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004524587 Unplaced Scaffold Reference OctDeg1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in U6 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA phosphodiesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Octodon degus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OctDeg1.0 Primary Assembly

Genomic

  1. NW_004524587.1 Reference OctDeg1.0 Primary Assembly

    Range
    25858601..25869788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004625938.2 → XP_004625995.1  U6 snRNA phosphodiesterase isoform X2

    UniProtKB/TrEMBL
    A0A6P3EK31
    Conserved Domains (1) summary
    pfam09749
    Location:46 → 245
    HVSL; uncharacterized conserved protein

  2. XM_004625937.2 → XP_004625994.1  U6 snRNA phosphodiesterase isoform X1

    UniProtKB/TrEMBL
    A0A6P3EYS1
    Related
    ENSODEP00000022069.1, ENSODET00000022330.1
    Conserved Domains (1) summary
    pfam09749
    Location:46 → 263
    HVSL; uncharacterized conserved protein

  3. XM_023709278.1 → XP_023565046.1  U6 snRNA phosphodiesterase isoform X3

    UniProtKB/TrEMBL
    A0A6P6DYI7
    Conserved Domains (1) summary
    pfam09749
    Location:3 → 210
    HVSL; Uncharacterized conserved protein
Nucleotide Protein
Heading Accession and Version

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