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NLGN1 neuroligin 1 [ Sorex araneus (European shrew) ]

Gene ID: 101558672, updated on 8-Mar-2024

Summary

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Gene symbol
NLGN1
Gene description
neuroligin 1
See related
EnsemblRapid:ENSSARG00000021603
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 2 NC_073303.1 (304539709..305497362, complement)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545863.1 (42854291..43767561, complement)

Chromosome 2 - NC_073303.1Genomic Context describing neighboring genes Neighboring gene small Cajal body-specific RNA 13 Neighboring gene 40S ribosomal protein S2-like Neighboring gene U2 spliceosomal RNA Neighboring gene U2 spliceosomal RNA Neighboring gene uncharacterized LOC129401988 Neighboring gene uncharacterized LOC129401989 Neighboring gene transfer RNA lysine (anticodon CUU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in modulation of chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postsynaptic membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in presynaptic membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic specialization membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuroligin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073303.1 Reference mSorAra2.pri

    Range
    304539709..305497362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055125786.1 → XP_054981761.1  neuroligin-1 isoform X1

  2. XM_055125785.1 → XP_054981760.1  neuroligin-1 isoform X1

  3. XM_055125790.1 → XP_054981765.1  neuroligin-1 isoform X5

  4. XM_004603095.2 → XP_004603152.2  neuroligin-1 isoform X1

    Related
    ENSSARP00000017661.1, ENSSART00000036436.1

  5. XM_004603098.2 → XP_004603155.2  neuroligin-1 isoform X4

    Related
    ENSSARP00000014924.1, ENSSART00000039048.1

  6. XM_055125787.1 → XP_054981762.1  neuroligin-1 isoform X2

    Related
    ENSSARP00000024892.1, ENSSART00000029548.1

  7. XM_055125788.1 → XP_054981763.1  neuroligin-1 isoform X3

    Related
    ENSSARP00000022740.1, ENSSART00000029728.1
Nucleotide Protein
Heading Accession and Version

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