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CALD1 caldesmon 1 [ Sorex araneus (European shrew) ]

Gene ID: 101557250, updated on 8-Mar-2024

Summary

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Gene symbol
CALD1
Gene description
caldesmon 1
See related
EnsemblRapid:ENSSARG00000025407
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 1 NC_073302.1 (433031212..433244028)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545887.1 (13052329..13158057, complement)

Chromosome 1 - NC_073302.1Genomic Context describing neighboring genes Neighboring gene aldo-keto reductase family 1 member B10 Neighboring gene bisphosphoglycerate mutase Neighboring gene meiotic nuclear division protein 1 homolog Neighboring gene protein S100-A10-like Neighboring gene AGBL carboxypeptidase 3 Neighboring gene transmembrane protein 140

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables myosin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caldesmon

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073302.1 Reference mSorAra2.pri

    Range
    433031212..433244028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055138265.1 → XP_054994240.1  caldesmon isoform X3

    Related
    ENSSARP00000017349.1, ENSSART00000021951.1

  2. XM_055138243.1 → XP_054994218.1  caldesmon isoform X1

    Related
    ENSSARP00000021464.1, ENSSART00000037087.1

  3. XM_055138250.1 → XP_054994225.1  caldesmon isoform X2

  4. XM_055138279.1 → XP_054994254.1  caldesmon isoform X5

  5. XM_055138275.1 → XP_054994250.1  caldesmon isoform X4

RNA

  1. XR_008630190.1 RNA Sequence

  2. XR_008630188.1 RNA Sequence

  3. XR_008630189.1 RNA Sequence

  4. XR_008630187.1 RNA Sequence

  5. XR_008630193.1 RNA Sequence

  6. XR_008630194.1 RNA Sequence

  7. XR_008630192.1 RNA Sequence

  8. XR_008630191.1 RNA Sequence

    Related
    ENSSART00000036922.1
Nucleotide Protein
Heading Accession and Version

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