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SYNPR synaptoporin [ Sorex araneus (European shrew) ]

Gene ID: 101555485, updated on 8-Mar-2024

Summary

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Gene symbol
SYNPR
Gene description
synaptoporin
See related
EnsemblRapid:ENSSARG00000034819
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 4 NC_073305.1 (59767793..60127699)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545952.1 (599331..949994, complement)

Chromosome 4 - NC_073305.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA70 Neighboring gene 39S ribosomal protein L47, mitochondrial-like Neighboring gene 60S ribosomal protein L27-like Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene cadherin-related family member 3-like Neighboring gene sentan, cilia apical structure protein Neighboring gene small nucleolar RNA SNORA48

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptoporin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073305.1 Reference mSorAra2.pri

    Range
    59767793..60127699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004616466.2 → XP_004616523.1  synaptoporin

    Related
    ENSSARP00000019985.1, ENSSART00000032152.1
    Conserved Domains (1) summary
    pfam01284
    Location:15 → 216
    MARVEL; Membrane-associating domain
Nucleotide Protein
Heading Accession and Version

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