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SYP synaptophysin [ Sorex araneus (European shrew) ]

Gene ID: 101548218, updated on 8-Mar-2024

Summary

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Gene symbol
SYP
Gene description
synaptophysin
See related
EnsemblRapid:ENSSARG00000002539
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) X NC_073313.1 (52141241..52158258, complement)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545877.1 (531419..544469, complement)

Chromosome X - NC_073313.1Genomic Context describing neighboring genes Neighboring gene prickle planar cell polarity protein 3 Neighboring gene proteolipid protein 2 Neighboring gene 60S ribosomal protein L39-like Neighboring gene calcium voltage-gated channel subunit alpha1 F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptophysin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073313.1 Reference mSorAra2.pri

    Range
    52141241..52158258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004606449.2 → XP_004606506.1  synaptophysin

    Related
    ENSSARP00000030507.1, ENSSART00000041226.1
    Conserved Domains (1) summary
    pfam01284
    Location:22 → 221
    MARVEL; Membrane-associating domain
Nucleotide Protein
Heading Accession and Version

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