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SEMA3E semaphorin 3E [ Sorex araneus (European shrew) ]

Gene ID: 101547644, updated on 8-Mar-2024

Summary

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Gene symbol
SEMA3E
Gene description
semaphorin 3E
See related
EnsemblRapid:ENSSARG00000012860
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 1 NC_073302.1 (396375048..396616642)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545860.1 (25556268..25793139, complement)

Chromosome 1 - NC_073302.1Genomic Context describing neighboring genes Neighboring gene GTP-binding protein 4-like Neighboring gene U6 spliceosomal RNA Neighboring gene piccolo presynaptic cytomatrix protein Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-3E

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073302.1 Reference mSorAra2.pri

    Range
    396375048..396616642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004602144.2 → XP_004602201.1  semaphorin-3E

    Related
    ENSSARP00000011612.2, ENSSART00000012858.2
    Conserved Domains (3) summary
    cd05871
    Location:585 → 670
    Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
    cd11253
    Location:49 → 519
    Sema_3E; The Sema domain, a protein interacting module, of semaphorin 3E (Sema3E)
    smart00423
    Location:518 → 566
    PSI; domain found in Plexins, Semaphorins and Integrins
Nucleotide Protein
Heading Accession and Version

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