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MMP9 matrix metallopeptidase 9 [ Sorex araneus (European shrew) ]

Gene ID: 101545527, updated on 8-Mar-2024

Summary

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Gene symbol
MMP9
Gene description
matrix metallopeptidase 9
See related
EnsemblRapid:ENSSARG00000005624
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 5 NC_073306.1 (129633557..129642813)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545979.1 (556691..565959)

Chromosome 5 - NC_073306.1Genomic Context describing neighboring genes Neighboring gene phosphorylated CTD interacting factor 1 Neighboring gene zinc finger protein 335 Neighboring gene solute carrier family 12 member 5 Neighboring gene nuclear receptor coactivator 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrix metalloproteinase-9
Names
matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073306.1 Reference mSorAra2.pri

    Range
    129633557..129642813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055140051.1 → XP_054996026.1  matrix metalloproteinase-9

    Related
    ENSSARP00000005099.2, ENSSART00000005629.2
Nucleotide Protein
Heading Accession and Version

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