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APOC1 apolipoprotein C1 [ Sorex araneus (European shrew) ]

Gene ID: 101543293, updated on 8-Mar-2024

Summary

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Gene symbol
APOC1
Gene description
apolipoprotein C1
See related
EnsemblRapid:ENSSARG00000024601
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 8 NC_073309.1 (48841188..48843650)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545883.1 (25575138..25577264, complement)

Chromosome 8 - NC_073309.1Genomic Context describing neighboring genes Neighboring gene translocase of outer mitochondrial membrane 40 Neighboring gene apolipoprotein E Neighboring gene apolipoprotein C4 Neighboring gene apolipoprotein C2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipoprotein metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of cholesterol transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of lipoprotein lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of very-low-density lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very-low-density lipoprotein particle clearance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of very-low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apolipoprotein C-I

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073309.1 Reference mSorAra2.pri

    Range
    48841188..48843650
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004607828.2 → XP_004607885.1  apolipoprotein C-I

    Related
    ENSSARP00000036629.1, ENSSART00000025416.1
    Conserved Domains (1) summary
    pfam04691
    Location:27 → 89
    ApoC-I; Apolipoprotein C-I (ApoC-1)
Nucleotide Protein
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