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NPAS4 neuronal PAS domain protein 4 [ Sorex araneus (European shrew) ]

Gene ID: 101542266, updated on 8-Mar-2024

Summary

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Gene symbol
NPAS4
Gene description
neuronal PAS domain protein 4
See related
EnsemblRapid:ENSSARG00000024532
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 6 NC_073307.1 (164688222..164702683)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545975.1 (2312238..2317635)

Chromosome 6 - NC_073307.1Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene solute carrier family 29 member 2 Neighboring gene mitochondrial ribosomal protein L11 Neighboring gene pellino E3 ubiquitin protein ligase family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuronal PAS domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073307.1 Reference mSorAra2.pri

    Range
    164688222..164702683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004618438.2 → XP_004618495.1  neuronal PAS domain-containing protein 4

    Conserved Domains (4) summary
    smart00091
    Location:72 → 135
    PAS; PAS domain
    cd00130
    Location:216 → 296
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:95 → 188
    PAS_3; PAS fold
    pfam14598
    Location:219 → 321
    PAS_11; PAS domain

  2. XM_055143155.1 → XP_054999130.1  neuronal PAS domain-containing protein 4

    Related
    ENSSARP00000038194.1, ENSSART00000021310.1
Nucleotide Protein
Heading Accession and Version

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