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DDX25 DEAD-box helicase 25 [ Sorex araneus (European shrew) ]

Gene ID: 101539787, updated on 8-Mar-2024

Summary

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Gene symbol
DDX25
Gene description
DEAD-box helicase 25
See related
EnsemblRapid:ENSSARG00000013832
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorex araneus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Soricidae; Soricinae; Sorex
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_04 current mSorAra2.pri (GCF_027595985.1) 3 NC_073304.1 (160754109..160767475, complement)
101 previous assembly SorAra2.0 (GCF_000181275.1) Unplaced Scaffold NW_004545927.1 (2041692..2055067)

Chromosome 3 - NC_073304.1Genomic Context describing neighboring genes Neighboring gene RNA pseudouridine synthase D4 Neighboring gene cell adhesion associated, oncogene regulated Neighboring gene HYLS1 centriolar and ciliogenesis associated Neighboring gene pseudouridine synthase 3 Neighboring gene prostate and testis expressed 3 Neighboring gene cullin 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_027595985.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSorAra2.pri

Genomic

  1. NC_073304.1 Reference mSorAra2.pri

    Range
    160754109..160767475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004614106.2 → XP_004614163.1  ATP-dependent RNA helicase DDX25 isoform X1

    Related
    ENSSARP00000012495.2, ENSSART00000013832.2
    Conserved Domains (3) summary
    smart00487
    Location:112 → 315
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:311 → 447
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cl21455
    Location:111 → 301
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_055131391.1 → XP_054987366.1  ATP-dependent RNA helicase DDX25 isoform X2

Nucleotide Protein
Heading Accession and Version

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