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ZNF48 zinc finger protein 48 [ Ochotona princeps (American pika) ]

Gene ID: 101536185, updated on 8-Mar-2024

Summary

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Gene symbol
ZNF48
Gene description
zinc finger protein 48
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 24
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 24 NC_080855.1 (24825652..24844426)
102 previous assembly OchPri4.0 (GCF_014633375.1) 6 NC_050541.1 (23689912..23693297)

Chromosome 24 - NC_080855.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 10B Neighboring gene myosin light chain 11 Neighboring gene septin 1 Neighboring gene zinc finger protein 771 Neighboring gene dCTP pyrophosphatase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 48

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080855.1 Reference mOchPri1.hap1

    Range
    24825652..24844426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004587140.2 → XP_004587197.1  zinc finger protein 48

    Conserved Domains (4) summary
    COG5048
    Location:118 → 596
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:118 → 138
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:459 → 481
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:569 → 592
    zf-H2C2_2; Zinc-finger double domain

  2. XM_058680503.1 → XP_058536486.1  zinc finger protein 48

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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