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EMX2 empty spiracles homeobox 2 [ Ochotona princeps (American pika) ]

Gene ID: 101535266, updated on 8-Mar-2024

Summary

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Gene symbol
EMX2
Gene description
empty spiracles homeobox 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 13 NC_080844.1 (59239934..59246042)
102 previous assembly OchPri4.0 (GCF_014633375.1) 18 NC_050553.1 (10777088..10783333, complement)

Chromosome 13 - NC_080844.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 18 member A2 Neighboring gene PDZ domain containing 8 Neighboring gene RAB11 family interacting protein 2 Neighboring gene family with sequence similarity 204 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein EMX2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080844.1 Reference mOchPri1.hap1

    Range
    59239934..59246042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004579783.2 → XP_004579840.1  homeobox protein EMX2 isoform X1

    Conserved Domains (1) summary
    pfam00046
    Location:157 → 209
    Homeobox; Homeobox domain

  2. XM_004579784.2 → XP_004579841.1  homeobox protein EMX2 isoform X2

Nucleotide Protein
Heading Accession and Version

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