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CLDN9 claudin 9 [ Ochotona princeps (American pika) ]

Gene ID: 101534624, updated on 8-Mar-2024

Summary

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Gene symbol
CLDN9
Gene description
claudin 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 24
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 24 NC_080855.1 (9177235..9178035)
102 previous assembly OchPri4.0 (GCF_014633375.1) 6 NC_050541.1 (7263751..7264476)

Chromosome 24 - NC_080855.1Genomic Context describing neighboring genes Neighboring gene protein kinase, membrane associated tyrosine/threonine 1 Neighboring gene glycine rich extracellular protein 1 Neighboring gene claudin 6 Neighboring gene TNF receptor superfamily member 12A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080855.1 Reference mOchPri1.hap1

    Range
    9177235..9178035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004586688.2 → XP_004586745.1  claudin-9

    Conserved Domains (1) summary
    cl21598
    Location:5 → 165
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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