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PDCD6 programmed cell death 6 [ Ochotona princeps (American pika) ]

Gene ID: 101532576, updated on 8-Mar-2024

Summary

Gene symbol
PDCD6
Gene description
programmed cell death 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
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Genomic context

Location:
chromosome: 23
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 23 NC_080854.1 (39180355..39194969, complement)
102 previous assembly OchPri4.0 (GCF_014633375.1) 11 NC_050546.1 (38713799..38726311, complement)

Chromosome 23 - NC_080854.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 3 Neighboring gene aryl hydrocarbon receptor repressor Neighboring gene succinate dehydrogenase complex flavoprotein subunit A Neighboring gene coiled-coil domain containing 127

Genomic regions, transcripts, and products

General protein information

Preferred Names
programmed cell death protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080854.1 Reference mOchPri1.hap1

    Range
    39180355..39194969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058680060.1XP_058536043.1  programmed cell death protein 6 isoform X3

  2. XM_004597907.3XP_004597964.1  programmed cell death protein 6 isoform X2

    See identical proteins and their annotated locations for XP_004597964.1

    Conserved Domains (1) summary
    cd16183
    Location:27189
    EFh_PEF_ALG-2; EF-hand, calcium binding motif, found in apoptosis-linked gene 2 protein (ALG-2) and similar proteins
  3. XM_004597906.3XP_004597963.1  programmed cell death protein 6 isoform X1

    See identical proteins and their annotated locations for XP_004597963.1

    Conserved Domains (3) summary
    cd00051
    Location:98154
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:96155
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:31120
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...