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JMJD1C jumonji domain containing 1C [ Ochotona princeps (American pika) ]

Gene ID: 101532522, updated on 8-Mar-2024

Summary

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Gene symbol
JMJD1C
Gene description
jumonji domain containing 1C
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 13 NC_080844.1 (27366849..27579409, complement)
102 previous assembly OchPri4.0 (GCF_014633375.1) 18 NC_050553.1 (43785681..43956241)

Chromosome 13 - NC_080844.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD20 Neighboring gene nuclear receptor binding factor 2 Neighboring gene U2 spliceosomal RNA Neighboring gene receptor accessory protein 3 Neighboring gene uncharacterized LOC131481785 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable JmjC domain-containing histone demethylation protein 2C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080844.1 Reference mOchPri1.hap1

    Range
    27366849..27579409 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058671960.1 → XP_058527943.1  probable JmjC domain-containing histone demethylation protein 2C isoform X4

  2. XM_058671956.1 → XP_058527939.1  probable JmjC domain-containing histone demethylation protein 2C isoform X2

  3. XM_012926495.2 → XP_012781949.2  probable JmjC domain-containing histone demethylation protein 2C isoform X1

  4. XM_058671961.1 → XP_058527944.1  probable JmjC domain-containing histone demethylation protein 2C isoform X5

  5. XM_058671959.1 → XP_058527942.1  probable JmjC domain-containing histone demethylation protein 2C isoform X4

  6. XM_058671958.1 → XP_058527941.1  probable JmjC domain-containing histone demethylation protein 2C isoform X3

  7. XM_058671962.1 → XP_058527945.1  probable JmjC domain-containing histone demethylation protein 2C isoform X6

Nucleotide Protein
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