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ATF3 activating transcription factor 3 [ Ochotona princeps (American pika) ]

Gene ID: 101522098, updated on 8-Mar-2024

Summary

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Gene symbol
ATF3
Gene description
activating transcription factor 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 10 NC_080841.1 (21746545..21758033)
102 previous assembly OchPri4.0 (GCF_014633375.1) 16 NC_050551.1 (22620429..22625736)

Chromosome 10 - NC_080841.1Genomic Context describing neighboring genes Neighboring gene proton activated chloride channel 1 Neighboring gene neudesin neurotrophic factor Neighboring gene golgi associated RAB2 interactor family member 4 Neighboring gene basic leucine zipper ATF-like transcription factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080841.1 Reference mOchPri1.hap1

    Range
    21746545..21758033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004578659.4 → XP_004578716.1  cyclic AMP-dependent transcription factor ATF-3

    See identical proteins and their annotated locations for XP_004578716.1

    Conserved Domains (1) summary
    cd14722
    Location:96 → 149
    bZIP_ATF3; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-3 (ATF-3) and similar proteins: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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