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ldlrad4 low density lipoprotein receptor class A domain containing 4 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101486909, updated on 21-Dec-2023

Summary

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Gene symbol
ldlrad4
Gene description
low density lipoprotein receptor class A domain containing 4
See related
Ensembl:ENSMZEG00005025398
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
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Genomic context

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Location:
chromosome: LG11
Exon count:
8
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG11 NC_036790.1 (4269132..4534486, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531775.1 (2206208..2473682)

Linkage Group LG11 - NC_036790.1Genomic Context describing neighboring genes Neighboring gene melanocortin receptor 5 Neighboring gene family with sequence similarity 210 member Ab Neighboring gene centrosomal protein 192 Neighboring gene SEH1-like (S. cerevisiae)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables R-SMAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
low-density lipoprotein receptor class A domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036790.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    4269132..4534486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004560061.2 → XP_004560118.1  low-density lipoprotein receptor class A domain-containing protein 4 isoform X1

    See identical proteins and their annotated locations for XP_004560118.1

    UniProtKB/TrEMBL
    A0A3P9DGW8, A0A3P9DHR6
    Related
    ENSMZEP00005033963.1, ENSMZET00005035159.1
    Conserved Domains (1) summary
    cd00112
    Location:16 → 47
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...

  2. XM_024804137.1 → XP_024659905.1  low-density lipoprotein receptor class A domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A3P9DGW8, A0A3P9DIF8
    Related
    ENSMZEP00005033967.1, ENSMZET00005035163.1

  3. XM_012921524.2 → XP_012776978.1  low-density lipoprotein receptor class A domain-containing protein 4 isoform X3

    See identical proteins and their annotated locations for XP_012776978.1

    UniProtKB/TrEMBL
    A0A3P9DGW8, A0A3P9DHV2
    Related
    ENSMZEP00005033964.1, ENSMZET00005035160.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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