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ppp1r9a protein phosphatase 1, regulatory subunit 9A [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101485155, updated on 8-Mar-2024

Summary

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Gene symbol
ppp1r9a
Gene description
protein phosphatase 1, regulatory subunit 9A
See related
Ensembl:ENSMZEG00005008423
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG22
Exon count:
21
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG22 NC_036800.1 (19748515..19798566)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531727.1 (4077875..4131563, complement)

Linkage Group LG22 - NC_036800.1Genomic Context describing neighboring genes Neighboring gene collagen, type I, alpha 2 Neighboring gene CAS1 domain containing 1 Neighboring gene sarcoglycan, epsilon Neighboring gene ankyrin repeat and SOCS box containing 4 Neighboring gene pyruvate dehydrogenase kinase, isozyme 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron projection development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neurabin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036800.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    19748515..19798566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012918281.2 → XP_012773735.1  neurabin-1 isoform X1

    See identical proteins and their annotated locations for XP_012773735.1

    UniProtKB/TrEMBL
    A0A3P9BMV0
    Conserved Domains (4) summary
    cd09512
    Location:1036 → 1093
    SAM_Neurabin-like; SAM domain of SAM_Neurabin-like subfamily
    smart00454
    Location:1041 → 1092
    SAM; Sterile alpha motif
    cd00992
    Location:499 → 582
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl19219
    Location:736 → 821
    DUF342; Protein of unknown function (DUF342)

  2. XM_004547917.4 → XP_004547974.1  neurabin-1 isoform X2

    UniProtKB/TrEMBL
    A0A3P9BMV0
    Conserved Domains (4) summary
    cd09512
    Location:1035 → 1092
    SAM_Neurabin-like; SAM domain of SAM_Neurabin-like subfamily
    smart00454
    Location:1040 → 1091
    SAM; Sterile alpha motif
    cd00992
    Location:499 → 582
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl19219
    Location:735 → 820
    DUF342; Protein of unknown function (DUF342)

  3. XM_004547918.4 → XP_004547975.1  neurabin-1 isoform X4

    UniProtKB/TrEMBL
    A0A3P9BMV0
    Conserved Domains (4) summary
    cd09512
    Location:1027 → 1084
    SAM_Neurabin-like; SAM domain of SAM_Neurabin-like subfamily
    smart00454
    Location:1032 → 1083
    SAM; Sterile alpha motif
    cd00992
    Location:499 → 582
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl19219
    Location:735 → 820
    DUF342; Protein of unknown function (DUF342)

  4. XM_004547916.4 → XP_004547973.1  neurabin-1 isoform X1

    See identical proteins and their annotated locations for XP_004547973.1

    UniProtKB/TrEMBL
    A0A3P9BMV0
    Conserved Domains (4) summary
    cd09512
    Location:1036 → 1093
    SAM_Neurabin-like; SAM domain of SAM_Neurabin-like subfamily
    smart00454
    Location:1041 → 1092
    SAM; Sterile alpha motif
    cd00992
    Location:499 → 582
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl19219
    Location:736 → 821
    DUF342; Protein of unknown function (DUF342)

  5. XM_012918283.3 → XP_012773737.1  neurabin-1 isoform X3

    UniProtKB/TrEMBL
    A0A3P9BMS1, A0A3P9BMV0
    Related
    ENSMZEP00005011252.1, ENSMZET00005011643.1
    Conserved Domains (4) summary
    cd09512
    Location:1028 → 1085
    SAM_Neurabin-like; SAM domain of SAM_Neurabin-like subfamily
    smart00454
    Location:1033 → 1084
    SAM; Sterile alpha motif
    cd00992
    Location:499 → 582
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl19219
    Location:736 → 821
    DUF342; Protein of unknown function (DUF342)
Nucleotide Protein
Heading Accession and Version

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