U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ogfod1 2-oxoglutarate and iron-dependent oxygenase domain containing 1 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101484295, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ogfod1
Gene description
2-oxoglutarate and iron-dependent oxygenase domain containing 1
See related
Ensembl:ENSMZEG00005013137
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: LG1
Exon count:
13
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG1 NC_036780.1 (17658666..17670836, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531718.1 (357443..364618, complement)

Linkage Group LG1 - NC_036780.1Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O, b Neighboring gene tnfrsf1a-associated via death domain Neighboring gene nudix hydrolase 21 Neighboring gene mucin-5AC

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptidyl-proline dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-proline hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of translational termination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
prolyl 3-hydroxylase OGFOD1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036780.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    17658666..17670836 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004543048.2 → XP_004543105.2  prolyl 3-hydroxylase OGFOD1

    UniProtKB/TrEMBL
    A0A3P9C5Y1
    Related
    ENSMZEP00005017464.1, ENSMZET00005018020.1
    Conserved Domains (2) summary
    pfam13661
    Location:168 → 265
    2OG-FeII_Oxy_4; 2OG-Fe(II) oxygenase superfamily
    cl21496
    Location:293 → 550
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.