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snrpf small nuclear ribonucleoprotein polypeptide F [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101483952, updated on 8-Mar-2024

Summary

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Gene symbol
snrpf
Gene description
small nuclear ribonucleoprotein polypeptide F
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
104 current M_zebra_UMD2a (GCF_000238955.4) Unplaced Scaffold NW_020192855.1 (52762..55751, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531966.1 (512713..515724)

NW_020192855.1Genomic Context describing neighboring genes Neighboring gene tetraspanin-9 Neighboring gene amidohydrolase domain containing 1 Neighboring gene netrin 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NW_020192855.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    52762..55751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004573743.5 → XP_004573800.1  small nuclear ribonucleoprotein F

    See identical proteins and their annotated locations for XP_004573800.1

    UniProtKB/TrEMBL
    A0A3P9CEQ1
    Conserved Domains (1) summary
    cd01722
    Location:6 → 74
    Sm_F; Sm protein F
Nucleotide Protein
Heading Accession and Version

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