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efemp1 EGF containing fibulin extracellular matrix protein 1 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101474115, updated on 8-Mar-2024

Summary

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Gene symbol
efemp1
Gene description
EGF containing fibulin extracellular matrix protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG13
Exon count:
11
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG13 NC_036792.1 (15773104..15792318, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531737.1 (5824949..5844161, complement)

Linkage Group LG13 - NC_036792.1Genomic Context describing neighboring genes Neighboring gene leucine-rich glioma-inactivated protein 1 Neighboring gene MAP/microtubule affinity-regulating kinase 1 Neighboring gene cystatin-SA Neighboring gene exportin 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
EGF-containing fibulin-like extracellular matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036792.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    15773104..15792318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004551712.5 → XP_004551769.1  EGF-containing fibulin-like extracellular matrix protein 1 isoform X2

    See identical proteins and their annotated locations for XP_004551769.1

    Conserved Domains (3) summary
    smart00179
    Location:207 → 237
    EGF_CA; Calcium-binding EGF-like domain
    cl00057
    Location:162 → 202
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl21504
    Location:287 → 313
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

  2. XM_004551711.5 → XP_004551768.1  EGF-containing fibulin-like extracellular matrix protein 1 isoform X1

    Conserved Domains (3) summary
    smart00179
    Location:235 → 265
    EGF_CA; Calcium-binding EGF-like domain
    cl00057
    Location:190 → 230
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl21504
    Location:315 → 341
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
Nucleotide Protein
Heading Accession and Version

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