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rnf216 ring finger protein 216 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101471302, updated on 8-Mar-2024

Summary

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Gene symbol
rnf216
Gene description
ring finger protein 216
See related
Ensembl:ENSMZEG00005007337
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See rnf216 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
17
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG4 NC_036783.1 (8996126..9015652)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531779.1 (2453782..2473430, complement)

Linkage Group LG4 - NC_036783.1Genomic Context describing neighboring genes Neighboring gene EF-hand calcium-binding domain-containing protein 1-like Neighboring gene SMAD specific E3 ubiquitin protein ligase 1 Neighboring gene fascin actin-bundling protein 1a Neighboring gene actin, beta 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF216

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036783.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    8996126..9015652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004560739.2 → XP_004560796.1  E3 ubiquitin-protein ligase RNF216

    UniProtKB/TrEMBL
    A0A3P9BIE6
    Related
    ENSMZEP00005009695.1, ENSMZET00005010055.1
    Conserved Domains (4) summary
    pfam01485
    Location:884 → 928
    IBR; IBR domain, a half RING-finger domain
    cd16630
    Location:735 → 791
    RING-HC_RBR_RNF216; RING finger, HC subclass, found in RING finger protein 216 (RNF216) and similar proteins
    cl25496
    Location:107 → 293
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl26464
    Location:150 → 498
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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