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rasgef1ba RasGEF domain family, member 1Ba [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101469854, updated on 8-Mar-2024

Summary

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Gene symbol
rasgef1ba
Gene description
RasGEF domain family, member 1Ba
See related
Ensembl:ENSMZEG00005020351
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Also known as
rasgef1b
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG12
Exon count:
17
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG12 NC_036791.1 (30805414..30931036, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531754.1 (1659030..1785446)

Linkage Group LG12 - NC_036791.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 299 Neighboring gene bone morphogenetic protein 3 Neighboring gene protein kinase cGMP-dependent 2 Neighboring gene uncharacterized LOC101470522 Neighboring gene transmembrane protein 175 Neighboring gene CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Ras protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-GEF domain-containing family member 1B
Names
RasGEF domain family member 1B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036791.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    30805414..30931036 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004555672.5 → XP_004555729.1  ras-GEF domain-containing family member 1B isoform X1

    Conserved Domains (2) summary
    cd06224
    Location:101 → 225
    REM; Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately ...
    pfam00617
    Location:268 → 461
    RasGEF; RasGEF domain

  2. XM_004555674.3 → XP_004555731.1  ras-GEF domain-containing family member 1B isoform X2

    UniProtKB/TrEMBL
    A0A3P9CY53
    Related
    ENSMZEP00005027285.1, ENSMZET00005028157.1
    Conserved Domains (2) summary
    cd06224
    Location:42 → 166
    REM; Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately ...
    pfam00617
    Location:209 → 402
    RasGEF; RasGEF domain
Nucleotide Protein
Heading Accession and Version

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