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ttc17 tetratricopeptide repeat domain 17 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101468713, updated on 8-Mar-2024

Summary

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Gene symbol
ttc17
Gene description
tetratricopeptide repeat domain 17
See related
Ensembl:ENSMZEG00005014070
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG1
Exon count:
25
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG1 NC_036780.1 (30822211..30850159)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531764.1 (3193738..3221715)

Linkage Group LG1 - NC_036780.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel, subfamily M, member 5 Neighboring gene TNF receptor-associated factor 6 Neighboring gene uncharacterized LOC105941060 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 12b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036780.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    30822211..30850159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004558069.2 → XP_004558126.1  tetratricopeptide repeat protein 17

    UniProtKB/TrEMBL
    A0A3P9C936, A0A3P9C9Q3
    Related
    ENSMZEP00005018774.1, ENSMZET00005019377.1
    Conserved Domains (6) summary
    COG0457
    Location:1037 → 1199
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1083 → 1110
    TPR; TPR repeat [structural motif]
    cd16269
    Location:384 → 395
    GBP_C; coiled coil [structural motif]
    pfam00515
    Location:302 → 333
    TPR_1; Tetratricopeptide repeat
    cl20817
    Location:324 → 415
    GBP_C; Guanylate-binding protein, C-terminal domain
    cl26002
    Location:622 → 714
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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