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nphp4 nephronophthisis 4 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101468167, updated on 8-Mar-2024

Summary

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Gene symbol
nphp4
Gene description
nephronophthisis 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG20
Exon count:
29
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG20 NC_036799.1 (8829967..9009426)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531892.1 (2217..128865)

Linkage Group LG20 - NC_036799.1Genomic Context describing neighboring genes Neighboring gene linkage group 20 C1orf174 homolog Neighboring gene DNA fragmentation factor, beta polypeptide (caspase-activated DNase) Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC112430103 Neighboring gene adherens junctions associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary base IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in non-motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nephrocystin-4
Names
nephrocystin 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036799.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    8829967..9009426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024798205.1 → XP_024653973.1  nephrocystin-4 isoform X1

    Conserved Domains (1) summary
    cl25836
    Location:429 → 560
    Retinal; Retinal protein

  2. XM_024798206.1 → XP_024653974.1  nephrocystin-4 isoform X2

    Conserved Domains (1) summary
    cl25836
    Location:323 → 454
    Retinal; Retinal protein
Nucleotide Protein
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Gene LinkOut

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