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hacl1 2-hydroxyacyl-CoA lyase 1 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101465513, updated on 8-Mar-2024

Summary

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Gene symbol
hacl1
Gene description
2-hydroxyacyl-CoA lyase 1
See related
Ensembl:ENSMZEG00005013889
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG11
Exon count:
17
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG11 NC_036790.1 (15733567..15740008)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531715.1 (8832460..8838901, complement)

Linkage Group LG11 - NC_036790.1Genomic Context describing neighboring genes Neighboring gene histone deacetylase 9b Neighboring gene uncharacterized LOC112435534 Neighboring gene ankyrin repeat domain 28b Neighboring gene collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid alpha-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-hydroxyacyl-CoA lyase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036790.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    15733567..15740008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004541503.1 → XP_004541560.1  2-hydroxyacyl-CoA lyase 1

    UniProtKB/TrEMBL
    A0A3P9C8V1, A0A3P9C9D4
    Related
    ENSMZEP00005018511.1, ENSMZET00005019109.1
    Conserved Domains (1) summary
    cl28198
    Location:5 → 552
    IlvB; Acetolactate synthase large subunit or other thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism, Coenzyme transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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