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tcf12 transcription factor 12 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101465421, updated on 8-Mar-2024

Summary

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Gene symbol
tcf12
Gene description
transcription factor 12
See related
Ensembl:ENSMZEG00005013679
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG1
Exon count:
22
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG1 NC_036780.1 (17951960..18037065)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531718.1 (647411..734458)

Linkage Group LG1 - NC_036780.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 280D Neighboring gene uncharacterized LOC105940752 Neighboring gene cingulin-like 1 Neighboring gene myocardial zonula adherens protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036780.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    17951960..18037065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004543071.2 → XP_004543128.1  transcription factor 12 isoform X1

    UniProtKB/TrEMBL
    A0A3P9C7J6
    Conserved Domains (1) summary
    smart00353
    Location:618 → 671
    HLH; helix loop helix domain

  2. XM_004543073.2 → XP_004543130.1  transcription factor 12 isoform X3

    UniProtKB/TrEMBL
    A0A3P9C7J6
    Conserved Domains (1) summary
    smart00353
    Location:614 → 667
    HLH; helix loop helix domain

  3. XM_004543072.2 → XP_004543129.1  transcription factor 12 isoform X2

    UniProtKB/TrEMBL
    A0A3P9C7J6
    Conserved Domains (1) summary
    smart00353
    Location:617 → 670
    HLH; helix loop helix domain

  4. XM_012917001.2 → XP_012772455.1  transcription factor 12 isoform X4

    UniProtKB/TrEMBL
    A0A3P9C7J6, A0A3P9C844
    Related
    ENSMZEP00005018234.1, ENSMZET00005018825.1
    Conserved Domains (1) summary
    smart00353
    Location:594 → 647
    HLH; helix loop helix domain

  5. XM_004543074.2 → XP_004543131.1  transcription factor 12 isoform X5

    UniProtKB/TrEMBL
    A0A3P9C7J6
    Conserved Domains (1) summary
    smart00353
    Location:593 → 646
    HLH; helix loop helix domain

  6. XM_012917003.4 → XP_012772457.1  transcription factor 12 isoform X6

    Conserved Domains (2) summary
    smart00353
    Location:445 → 498
    HLH; helix loop helix domain
    cl27571
    Location:56 → 248
    ArfGap; Putative GTPase activating protein for Arf

  7. XM_012917004.4 → XP_012772458.1  transcription factor 12 isoform X7

    Conserved Domains (2) summary
    smart00353
    Location:420 → 473
    HLH; helix loop helix domain
    cl27571
    Location:56 → 228
    ArfGap; Putative GTPase activating protein for Arf

  8. XM_012917005.4 → XP_012772459.1  transcription factor 12 isoform X8

    UniProtKB/TrEMBL
    A0A3P9C7K2
    Related
    ENSMZEP00005018255.1, ENSMZET00005018846.1
    Conserved Domains (2) summary
    smart00353
    Location:421 → 474
    HLH; helix loop helix domain
    cl27571
    Location:56 → 228
    ArfGap; Putative GTPase activating protein for Arf
Nucleotide Protein
Heading Accession and Version

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