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LOC101452739 E3 ubiquitin-protein ligase RBBP6 [ Ceratitis capitata (Mediterranean fruit fly) ]

Gene ID: 101452739, updated on 22-Oct-2023

Summary

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Gene symbol
LOC101452739
Gene description
E3 ubiquitin-protein ligase RBBP6
See related
EnsemblRapid:LOC101452739
Gene type
protein coding
RefSeq status
MODEL
Organism
Ceratitis capitata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Ceratitis; Ceratitis
Also known as
Rbbp6
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
103 current Ccap_2.1 (GCF_000347755.3) Unplaced Scaffold NW_019376348.1 (4466453..4477739, complement)

NW_019376348.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101451782 Neighboring gene nucleosome assembly protein 1-like 1-A Neighboring gene solute carrier family 12 member 6 Neighboring gene cleavage and polyadenylation specificity factor subunit 4 Neighboring gene acyl-CoA synthetase family member 3, mitochondrial Neighboring gene cofilin/actin-depolymerizing factor homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019376348 Unplaced Scaffold Reference Ccap_2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genomic perspective to assessing quality of mass-reared SIT flies used in Mediterranean fruit fly (Ceratitis capitata) eradication in California. Calla B, et al. BMC Genomics, 2014 Feb 5. PMID 24495485, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RBBP6
Names
retinoblastoma binding protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ceratitis capitata Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ccap_2.1 Primary Assembly

Genomic

  1. NW_019376348.1 Reference Ccap_2.1 Primary Assembly

    Range
    4466453..4477739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004534714.3 → XP_004534771.1  E3 ubiquitin-protein ligase RBBP6 isoform X1

    UniProtKB/TrEMBL
    W8BWN2
    Related
    XP_004534771.1, XM_004534714.3
    Conserved Domains (4) summary
    COG5222
    Location:3 → 313
    COG5222; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    cd00162
    Location:218 → 261
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam08783
    Location:3 → 75
    DWNN; DWNN domain
    pfam13696
    Location:148 → 167
    zf-CCHC_2; Zinc knuckle

  2. XM_012305388.2 → XP_012160778.1  E3 ubiquitin-protein ligase RBBP6 isoform X2

    See identical proteins and their annotated locations for XP_012160778.1

    UniProtKB/TrEMBL
    W8C4W7
    Related
    XP_012160778.1, XM_012305388.2
    Conserved Domains (2) summary
    cl25716
    Location:371 → 442
    Amelogenin; Amelogenin
    cl26688
    Location:11 → 203
    DWNN; DWNN domain

  3. XM_020860947.1 → XP_020716606.1  E3 ubiquitin-protein ligase RBBP6 isoform X2

    UniProtKB/TrEMBL
    W8C4W7
    Related
    XP_020716606.1, XM_020860947.1
    Conserved Domains (2) summary
    cl25716
    Location:371 → 442
    Amelogenin; Amelogenin
    cl26688
    Location:11 → 203
    DWNN; DWNN domain

  4. XM_012305386.2 → XP_012160776.1  E3 ubiquitin-protein ligase RBBP6 isoform X2

    See identical proteins and their annotated locations for XP_012160776.1

    UniProtKB/TrEMBL
    W8C4W7
    Related
    XP_012160776.1, XM_012305386.2
    Conserved Domains (2) summary
    cl25716
    Location:371 → 442
    Amelogenin; Amelogenin
    cl26688
    Location:11 → 203
    DWNN; DWNN domain

  5. XM_020860946.1 → XP_020716605.1  E3 ubiquitin-protein ligase RBBP6 isoform X2

    UniProtKB/TrEMBL
    W8C4W7
    Related
    XP_020716605.1, XM_020860946.1
    Conserved Domains (2) summary
    cl25716
    Location:371 → 442
    Amelogenin; Amelogenin
    cl26688
    Location:11 → 203
    DWNN; DWNN domain
Nucleotide Protein
Heading Accession and Version

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