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SYCP1 synaptonemal complex protein 1 [ Dasypus novemcinctus (nine-banded armadillo) ]

Gene ID: 101444439, updated on 8-Mar-2024

Summary

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Gene symbol
SYCP1
Gene description
synaptonemal complex protein 1
See related
Ensembl:ENSDNOG00000011716
Gene type
protein coding
RefSeq status
MODEL
Organism
Dasypus novemcinctus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Cingulata; Dasypodidae; Dasypus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2023_07 current mDasNov1.hap2 (GCF_030445035.1) 9 NC_080681.1 (8272012..8443282, complement)
102 previous assembly Dasnov3.0 (GCF_000208655.1) Unplaced Scaffold NW_004481249.1 (1005039..1179056, complement)

Chromosome 9 - NC_080681.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 42 homolog Neighboring gene thyroid stimulating hormone subunit beta Neighboring gene bile acid receptor-like Neighboring gene uncharacterized LOC131279687 Neighboring gene suppressor of IKBKE 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chiasma assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lateral element assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic DNA repair synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptonemal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in central element IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in male germ cell nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptonemal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in transverse filament IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptonemal complex protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030445035.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mDasNov1.hap2

Genomic

  1. NC_080681.1 Reference mDasNov1.hap2

    Range
    8272012..8443282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058303000.1 → XP_058158983.1  synaptonemal complex protein 1 isoform X2

  2. XM_058303001.1 → XP_058158984.1  synaptonemal complex protein 1 isoform X3

  3. XM_023590098.2 → XP_023445866.1  synaptonemal complex protein 1 isoform X1

    Related
    ENSDNOP00000009090.3
    Conserved Domains (1) summary
    cl25732
    Location:28 → 811
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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