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KDM2A lysine demethylase 2A [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101385046, updated on 8-Mar-2024

Summary

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Gene symbol
KDM2A
Gene description
lysine demethylase 2A
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450289.1 (3031144..3143114, complement)

NW_004450289.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 13D Neighboring gene G protein-coupled receptor kinase 2 Neighboring gene ras homolog family member D Neighboring gene synaptotagmin 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450289.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 2A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450289.1 Reference Oros_1.0 Primary Assembly

    Range
    3031144..3143114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004393852.2 → XP_004393909.1  lysine-specific demethylase 2A isoform X1

    UniProtKB/TrEMBL
    A0A2U3VGZ9
    Conserved Domains (6) summary
    cd09293
    Location:932 → 1138
    AMN1; Antagonist of mitotic exit network protein 1
    pfam02008
    Location:576 → 609
    zf-CXXC; CXXC zinc finger domain
    sd00034
    Location:930 → 954
    LRR_AMN1; leucine-rich repeat [structural motif]
    cd15643
    Location:619 → 675
    PHD_KDM2A; PHD finger found in Lysine-specific demethylase 2A (KDM2A)
    pfam12937
    Location:896 → 936
    F-box-like; F-box-like
    cl21464
    Location:199 → 299
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_004393853.2 → XP_004393910.1  lysine-specific demethylase 2A isoform X2

    UniProtKB/TrEMBL
    A0A2U3VGL0
    Conserved Domains (6) summary
    cd09293
    Location:915 → 1121
    AMN1; Antagonist of mitotic exit network protein 1
    pfam02008
    Location:559 → 592
    zf-CXXC; CXXC zinc finger domain
    sd00034
    Location:913 → 937
    LRR_AMN1; leucine-rich repeat [structural motif]
    cd15643
    Location:602 → 658
    PHD_KDM2A; PHD finger found in Lysine-specific demethylase 2A (KDM2A)
    pfam12937
    Location:879 → 919
    F-box-like; F-box-like
    cl21464
    Location:182 → 282
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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