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DDX19B DEAD-box helicase 19B [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101381990, updated on 8-Mar-2024

Summary

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Gene symbol
DDX19B
Gene description
DEAD-box helicase 19B
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450279.1 (54566..73768)

NW_004450279.1Genomic Context describing neighboring genes Neighboring gene exosome component 6 Neighboring gene phosphatidylinositol N-acetylglucosaminyltransferase subunit P Neighboring gene alanyl-tRNA synthetase 1 Neighboring gene DEAD-box helicase 19A Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450279.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX19B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450279.1 Reference Oros_1.0 Primary Assembly

    Range
    54566..73768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004393275.2 → XP_004393332.1  ATP-dependent RNA helicase DDX19B isoform X1

    UniProtKB/TrEMBL
    A0A2U3VF54
    Conserved Domains (3) summary
    PTZ00424
    Location:95 → 473
    PTZ00424; helicase 45; Provisional
    cd00079
    Location:311 → 446
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cl21455
    Location:98 → 300
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_004393274.2 → XP_004393331.1  ATP-dependent RNA helicase DDX19B isoform X2

    UniProtKB/TrEMBL
    A0A2U3VF53
    Conserved Domains (2) summary
    cd18787
    Location:346 → 482
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cl28899
    Location:114 → 342
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  3. XM_004393276.2 → XP_004393333.1  ATP-dependent RNA helicase DDX19B isoform X3

    UniProtKB/TrEMBL
    A0A2U3VF38
    Conserved Domains (3) summary
    COG0513
    Location:101 → 447
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00079
    Location:276 → 411
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cl21455
    Location:100 → 265
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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