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RNF111 ring finger protein 111 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101381586, updated on 8-Mar-2024

Summary

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Gene symbol
RNF111
Gene description
ring finger protein 111
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450574.1 (1715868..1805899)

NW_004450574.1Genomic Context describing neighboring genes Neighboring gene MINDY lysine 48 deubiquitinase 2 Neighboring gene SAFB like transcription modulator Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene cyclin B2 Neighboring gene myosin IE

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450574.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SMAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SUMO polymer binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase Arkadia

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450574.1 Reference Oros_1.0 Primary Assembly

    Range
    1715868..1805899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012564653.1 → XP_012420107.1  E3 ubiquitin-protein ligase Arkadia isoform X2

    See identical proteins and their annotated locations for XP_012420107.1

    UniProtKB/TrEMBL
    A0A2U3WEA1, A0A2U3ZM86
    Conserved Domains (2) summary
    pfam13639
    Location:940 → 981
    zf-RING_2; Ring finger domain
    pfam15303
    Location:18 → 251
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus

  2. XM_012564652.1 → XP_012420106.1  E3 ubiquitin-protein ligase Arkadia isoform X5

    UniProtKB/TrEMBL
    A0A2U3WEA1
    Conserved Domains (2) summary
    pfam13639
    Location:931 → 972
    zf-RING_2; Ring finger domain
    pfam15303
    Location:18 → 251
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus

  3. XM_004406857.1 → XP_004406914.1  E3 ubiquitin-protein ligase Arkadia isoform X4

    UniProtKB/TrEMBL
    A0A2U3WEA1, A0A2U3WEA7
    Conserved Domains (2) summary
    pfam13639
    Location:932 → 973
    zf-RING_2; Ring finger domain
    pfam15303
    Location:18 → 251
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus

  4. XM_012564651.1 → XP_012420105.1  E3 ubiquitin-protein ligase Arkadia isoform X3

    UniProtKB/TrEMBL
    A0A2U3WEA1
    Conserved Domains (2) summary
    pfam13639
    Location:939 → 980
    zf-RING_2; Ring finger domain
    pfam15303
    Location:18 → 251
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus

  5. XM_012564654.1 → XP_012420108.1  E3 ubiquitin-protein ligase Arkadia isoform X7

    UniProtKB/TrEMBL
    A0A2U3WEA1
    Conserved Domains (1) summary
    pfam15303
    Location:18 → 251
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus

  6. XM_004406854.2 → XP_004406911.1  E3 ubiquitin-protein ligase Arkadia isoform X6

    UniProtKB/TrEMBL
    A0A2U3WE89, A0A2U3WEA1
    Conserved Domains (2) summary
    pfam13639
    Location:941 → 982
    zf-RING_2; Ring finger domain
    pfam15303
    Location:18 → 251
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus

  7. XM_004406855.1 → XP_004406912.1  E3 ubiquitin-protein ligase Arkadia isoform X2

    See identical proteins and their annotated locations for XP_004406912.1

    UniProtKB/TrEMBL
    A0A2U3WEA1, A0A2U3ZM86
    Conserved Domains (2) summary
    pfam13639
    Location:940 → 981
    zf-RING_2; Ring finger domain
    pfam15303
    Location:18 → 251
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus

  8. XM_004406856.2 → XP_004406913.1  E3 ubiquitin-protein ligase Arkadia isoform X2

    See identical proteins and their annotated locations for XP_004406913.1

    UniProtKB/TrEMBL
    A0A2U3WEA1, A0A2U3ZM86
    Conserved Domains (2) summary
    pfam13639
    Location:940 → 981
    zf-RING_2; Ring finger domain
    pfam15303
    Location:18 → 251
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus

  9. XM_004406858.2 → XP_004406915.2  E3 ubiquitin-protein ligase Arkadia isoform X1

    UniProtKB/TrEMBL
    A0A2U3WEA1
    Conserved Domains (2) summary
    pfam13639
    Location:949 → 990
    zf-RING_2; Ring finger domain
    pfam15303
    Location:18 → 251
    RNF111_N; E3 ubiquitin-protein ligase Arkadia N-terminus
Nucleotide Protein
Heading Accession and Version

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