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PTBP3 polypyrimidine tract binding protein 3 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101380074, updated on 8-Mar-2024

Summary

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Gene symbol
PTBP3
Gene description
polypyrimidine tract binding protein 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450325.1 (2016593..2128185)

NW_004450325.1Genomic Context describing neighboring genes Neighboring gene KIAA1958 ortholog Neighboring gene hydroxysteroid dehydrogenase like 2 Neighboring gene ELL-associated factor 2 pseudogene Neighboring gene sushi domain containing 1 Neighboring gene 40S ribosomal protein S6 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450325.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: polypyrimidine tract-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450325.1 Reference Oros_1.0 Primary Assembly

    Range
    2016593..2128185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012561194.1 → XP_012416648.1  LOW QUALITY PROTEIN: polypyrimidine tract-binding protein 3

    UniProtKB/TrEMBL
    A0A9B0GBW7
    Conserved Domains (4) summary
    cd12693
    Location:209 → 313
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    cd12703
    Location:511 → 591
    RRM4_ROD1; RNA recognition motif 4 in vertebrate regulator of differentiation 1 (Rod1)
    TIGR01649
    Location:93 → 591
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:398 → 490
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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