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WSB1 WD repeat and SOCS box containing 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101380003, updated on 8-Mar-2024

Summary

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Gene symbol
WSB1
Gene description
WD repeat and SOCS box containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See WSB1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450362.1 (1684093..1699994)

NW_004450362.1Genomic Context describing neighboring genes Neighboring gene neurofibromin 1 Neighboring gene ecotropic viral integration site 2B Neighboring gene oligodendrocyte myelin glycoprotein Neighboring gene kinase suppressor of ras 1 Neighboring gene galectin 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450362.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat and SOCS box-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450362.1 Reference Oros_1.0 Primary Assembly

    Range
    1684093..1699994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004399631.1 → XP_004399688.1  WD repeat and SOCS box-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2U3VW42
    Conserved Domains (3) summary
    cd00200
    Location:135 → 388
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cd03746
    Location:382 → 421
    SOCS_WSB1_SWIP1; SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 ...
    sd00039
    Location:174 → 212
    7WD40; WD40 repeat [structural motif]

  2. XM_012562095.1 → XP_012417549.1  WD repeat and SOCS box-containing protein 1 isoform X3

    Conserved Domains (3) summary
    COG2319
    Location:38 → 238
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:59 → 105
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:38 → 231
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_012562096.1 → XP_012417550.1  WD repeat and SOCS box-containing protein 1 isoform X4

    Conserved Domains (3) summary
    COG2319
    Location:109 → 207
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:105 → 136
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:104 → 200
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_004399632.1 → XP_004399689.1  WD repeat and SOCS box-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2U3VW55
    Conserved Domains (4) summary
    COG2319
    Location:14 → 236
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:14 → 233
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cd03746
    Location:236 → 275
    SOCS_WSB1_SWIP1; SOCS (suppressors of cytokine signaling) box of WSB1/SWiP1-like proteins. This subfamily contains WSB-1 (SOCS-box-containing WD-40 protein), part of an E3 ubiquitin ligase for the thyroid-hormone-activating type 2 iodothyronine deiodinase (D2) and SWiP-1 ...
    sd00039
    Location:28 → 66
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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