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SLC6A4 solute carrier family 6 member 4 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101375365, updated on 8-Mar-2024

Summary

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Gene symbol
SLC6A4
Gene description
solute carrier family 6 member 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450362.1 (3987971..4009801, complement)

NW_004450362.1Genomic Context describing neighboring genes Neighboring gene EF-hand calcium binding domain 5 Neighboring gene 60S ribosomal protein L37a-like Neighboring gene nuclear speckle splicing regulatory protein 1 Neighboring gene bleomycin hydrolase Neighboring gene transmembrane and immunoglobulin domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450362.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serotonin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serotonin:sodium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in serotonin uptake IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium-dependent serotonin transporter
Names
solute carrier family 6 (neurotransmitter transporter, serotonin), member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450362.1 Reference Oros_1.0 Primary Assembly

    Range
    3987971..4009801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004399702.2 → XP_004399759.1  sodium-dependent serotonin transporter

    UniProtKB/TrEMBL
    A0A2U3VWB0
    Conserved Domains (2) summary
    cd11513
    Location:80 → 616
    SLC6sbd_SERT; Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain
    pfam03491
    Location:24 → 65
    5HT_transport_N; Serotonin (5-HT) neurotransmitter transporter, N-terminus
Nucleotide Protein
Heading Accession and Version

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