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SNX1 sorting nexin 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101374623, updated on 8-Mar-2024

Summary

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Gene symbol
SNX1
Gene description
sorting nexin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450692.1 (1516380..1549871, complement)

NW_004450692.1Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase B Neighboring gene sorting nexin 22 Neighboring gene cytosolic iron-sulfur assembly component 2A Neighboring gene death associated protein kinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450692.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in early endosome to Golgi transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450692.1 Reference Oros_1.0 Primary Assembly

    Range
    1516380..1549871 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004409426.1 → XP_004409483.1  sorting nexin-1 isoform X3

    UniProtKB/TrEMBL
    A0A2U3WKR4
    Conserved Domains (2) summary
    cd07665
    Location:220 → 453
    BAR_SNX1; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1
    cl02563
    Location:90 → 202
    PX_domain; The Phox Homology domain, a phosphoinositide binding module

  2. XM_004409425.2 → XP_004409482.1  sorting nexin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2U3WKW0, A0A9B0LYP3
    Conserved Domains (3) summary
    cd07281
    Location:95 → 218
    PX_SNX1; The phosphoinositide binding Phox Homology domain of Sorting Nexin 1
    pfam03700
    Location:3 → 79
    Sorting_nexin; Sorting nexin, N-terminal domain
    cl12013
    Location:236 → 469
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

  3. XM_004409424.2 → XP_004409481.1  sorting nexin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2U3WKQ9, A0A9B0LYP3
    Conserved Domains (3) summary
    cd07281
    Location:143 → 266
    PX_SNX1; The phosphoinositide binding Phox Homology domain of Sorting Nexin 1
    cd07665
    Location:284 → 517
    BAR_SNX1; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1
    pfam03700
    Location:67 → 127
    Sorting_nexin; Sorting nexin, N-terminal domain
Nucleotide Protein
Heading Accession and Version

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