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CPEB4 cytoplasmic polyadenylation element binding protein 4 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101373388, updated on 8-Mar-2024

Summary

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Gene symbol
CPEB4
Gene description
cytoplasmic polyadenylation element binding protein 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See CPEB4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450268.1 (225885..288324, complement)

NW_004450268.1Genomic Context describing neighboring genes Neighboring gene neuronal vesicle trafficking associated 2 Neighboring gene chromosome unknown C5orf47 homolog Neighboring gene biorientation of chromosomes in cell division 1 Neighboring gene stanniocalcin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450268.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA regulatory element binding translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation factor activity, RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of messenger ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoplasmic polyadenylation element-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450268.1 Reference Oros_1.0 Primary Assembly

    Range
    225885..288324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004391987.2 → XP_004392044.1  cytoplasmic polyadenylation element-binding protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A2U3VBY1
    Conserved Domains (4) summary
    COG0724
    Location:443 → 609
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:447 → 538
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:555 → 635
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:630 → 691
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  2. XM_004391986.2 → XP_004392043.1  cytoplasmic polyadenylation element-binding protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A2U3VCD8
    Conserved Domains (4) summary
    COG0724
    Location:451 → 617
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:455 → 546
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:563 → 643
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:638 → 699
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  3. XM_004391985.2 → XP_004392042.1  cytoplasmic polyadenylation element-binding protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A2U3VBX9
    Conserved Domains (4) summary
    COG0724
    Location:468 → 634
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:472 → 563
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:580 → 660
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:655 → 716
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain

  4. XM_012561343.1 → XP_012416797.1  cytoplasmic polyadenylation element-binding protein 4 isoform X5

    See identical proteins and their annotated locations for XP_012416797.1

    Conserved Domains (3) summary
    pfam16366
    Location:248 → 309
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    cd12724
    Location:65 → 156
    RRM1_CPEB2_like; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:173 → 253
    RRM2_CPEB2_like; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens

  5. XM_012561337.1 → XP_012416791.1  cytoplasmic polyadenylation element-binding protein 4 isoform X2

    Conserved Domains (4) summary
    COG0724
    Location:460 → 626
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12724
    Location:464 → 555
    RRM1_CPEB2_like; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    cd12726
    Location:572 → 652
    RRM2_CPEB2_like; RNA recognition motif 2 found in cytoplasmic polyadenylation element-binding protein CPEB-2, CPEB-3, CPEB-4 and similar protiens
    pfam16366
    Location:647 → 708
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
Nucleotide Protein
Heading Accession and Version

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