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SUPT20H SPT20 homolog, SAGA complex component [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101369121, updated on 8-Mar-2024

Summary

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Gene symbol
SUPT20H
Gene description
SPT20 homolog, SAGA complex component
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450367.1 (2118323..2156914)

NW_004450367.1Genomic Context describing neighboring genes Neighboring gene ORM1-like protein 2 pseudogene Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 pseudogene Neighboring gene exosome component 8 Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase Neighboring gene SMAD family member 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450367.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SPT20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450367.1 Reference Oros_1.0 Primary Assembly

    Range
    2118323..2156914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012562189.1 → XP_012417643.1  transcription factor SPT20 homolog isoform X6

    Conserved Domains (1) summary
    pfam12090
    Location:64 → 226
    Spt20; Spt20 family

  2. XM_012562186.1 → XP_012417640.1  transcription factor SPT20 homolog isoform X2

    Conserved Domains (1) summary
    pfam12090
    Location:63 → 225
    Spt20; Spt20 family

  3. XM_004399903.1 → XP_004399960.1  transcription factor SPT20 homolog isoform X4

    UniProtKB/TrEMBL
    A0A2U3VWX2
    Conserved Domains (1) summary
    pfam12090
    Location:63 → 225
    Spt20; Spt20 family

  4. XM_012562188.1 → XP_012417642.1  transcription factor SPT20 homolog isoform X5

    Conserved Domains (1) summary
    pfam12090
    Location:63 → 225
    Spt20; Spt20 family

  5. XM_012562187.1 → XP_012417641.1  transcription factor SPT20 homolog isoform X3

    Conserved Domains (1) summary
    pfam12090
    Location:63 → 225
    Spt20; Spt20 family

  6. XM_012562185.1 → XP_012417639.1  transcription factor SPT20 homolog isoform X1

    Conserved Domains (1) summary
    pfam12090
    Location:64 → 226
    Spt20; Spt20 family
Nucleotide Protein
Heading Accession and Version

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