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SF3B5 splicing factor 3b subunit 5 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101364964, updated on 8-Mar-2024

Summary

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Gene symbol
SF3B5
Gene description
splicing factor 3b subunit 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450326.1 (3917742..3918499, complement)

NW_004450326.1Genomic Context describing neighboring genes Neighboring gene PLAG1 like zinc finger 1 Neighboring gene serine/threonine-protein phosphatase PGAM5, mitochondrial pseudogene Neighboring gene 60S ribosomal protein L26-like Neighboring gene heat shock cognate 71 kDa protein pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450326.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450326.1 Reference Oros_1.0 Primary Assembly

    Range
    3917742..3918499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004397037.2 → XP_004397094.1  splicing factor 3B subunit 5

    See identical proteins and their annotated locations for XP_004397094.1

    UniProtKB/TrEMBL
    A0A2U3VPM9
    Conserved Domains (1) summary
    pfam07189
    Location:3 → 77
    SF3b10; Splicing factor 3B subunit 10 (SF3b10)
Nucleotide Protein
Heading Accession and Version

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