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CILP2 cartilage intermediate layer protein 2 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101363038, updated on 8-Mar-2024

Summary

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Gene symbol
CILP2
Gene description
cartilage intermediate layer protein 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450481.1 (2613907..2622179)

NW_004450481.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit A13 Neighboring gene YjeF N-terminal domain containing 3 Neighboring gene PBX homeobox 4 Neighboring gene lysophosphatidic acid receptor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450481.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cartilage intermediate layer protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450481.1 Reference Oros_1.0 Primary Assembly

    Range
    2613907..2622179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004404688.1 → XP_004404745.1  cartilage intermediate layer protein 2

    UniProtKB/TrEMBL
    A0A2U3W8Y7
    Conserved Domains (7) summary
    smart00408
    Location:307 → 367
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:149 → 197
    TSP1; Thrombospondin type 1 repeats
    smart00410
    Location:305 → 378
    IG_like; Immunoglobulin like
    pfam13330
    Location:58 → 143
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
    pfam13620
    Location:213 → 266
    CarboxypepD_reg; Carboxypeptidase regulatory-like domain
    pfam13715
    Location:476 → 527
    CarbopepD_reg_2; CarboxypepD_reg-like domain
    cl21545
    Location:413 → 467
    GHB_like; Glycoprotein hormone beta chain homologues
Nucleotide Protein
Heading Accession and Version

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