U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AFF1 ALF transcription elongation factor 1 [ Tursiops truncatus (common bottlenose dolphin) ]

Gene ID: 101336021, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
AFF1
Gene description
ALF transcription elongation factor 1
See related
EnsemblRapid:ENSTTRG00000005595
Gene type
protein coding
RefSeq status
MODEL
Organism
Tursiops truncatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
26
Annotation release Status Assembly Chr Location
102 current mTurTru1.mat.Y (GCF_011762595.1) 5 NC_047038.1 (101902856..102109666)
101 previous assembly NIST Tur_tru v1 (GCF_001922835.1) Unplaced Scaffold NW_017842585.1 (33847053..34043713)

Chromosome 5 - NC_047038.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 D3-like Neighboring gene chromosome 5 C4orf36 homolog Neighboring gene kelch like family member 8 Neighboring gene hydroxysteroid 17-beta dehydrogenase 13

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of super elongation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
AF4/FMR2 family member 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Tursiops truncatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mTurTru1.mat.Y Primary Assembly

Genomic

  1. NC_047038.1 Reference mTurTru1.mat.Y Primary Assembly

    Range
    101902856..102109666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019926694.2 → XP_019782253.1  AF4/FMR2 family member 1 isoform X4

    UniProtKB/TrEMBL
    A0A2U4AMR3
    Conserved Domains (1) summary
    pfam05110
    Location:16 → 1223
    AF-4; AF-4 proto-oncoprotein

  2. XM_019926699.2 → XP_019782258.1  AF4/FMR2 family member 1 isoform X10

    UniProtKB/TrEMBL
    A0A2U4AMR8
    Conserved Domains (1) summary
    pfam05110
    Location:17 → 1066
    AF-4; AF-4 proto-oncoprotein

  3. XM_019926691.2 → XP_019782250.1  AF4/FMR2 family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A2U4AMR7
    Conserved Domains (1) summary
    pfam05110
    Location:17 → 1225
    AF-4; AF-4 proto-oncoprotein

  4. XM_033857213.1 → XP_033713104.1  AF4/FMR2 family member 1 isoform X7

    UniProtKB/TrEMBL
    A0A6J3RF47
    Conserved Domains (2) summary
    pfam05110
    Location:16 → 428
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:937 → 1199
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  5. XM_033857214.1 → XP_033713105.1  AF4/FMR2 family member 1 isoform X8

    UniProtKB/TrEMBL
    A0A6J3REC2
    Conserved Domains (3) summary
    PHA03307
    Location:493 → 746
    PHA03307; transcriptional regulator ICP4; Provisional
    pfam05110
    Location:16 → 427
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:936 → 1198
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  6. XM_019926692.2 → XP_019782251.1  AF4/FMR2 family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A2U4AMU3
    Conserved Domains (1) summary
    pfam05110
    Location:16 → 1224
    AF-4; AF-4 proto-oncoprotein

  7. XM_019926693.2 → XP_019782252.1  AF4/FMR2 family member 1 isoform X3

    UniProtKB/TrEMBL
    A0A2U4AMR0
    Conserved Domains (1) summary
    pfam05110
    Location:17 → 1224
    AF-4; AF-4 proto-oncoprotein

  8. XM_019926695.2 → XP_019782254.1  AF4/FMR2 family member 1 isoform X5

    UniProtKB/TrEMBL
    A0A2U4AN55
    Conserved Domains (1) summary
    pfam05110
    Location:10 → 1218
    AF-4; AF-4 proto-oncoprotein

  9. XM_019926696.2 → XP_019782255.1  AF4/FMR2 family member 1 isoform X6

    UniProtKB/TrEMBL
    A0A2U4AMS3
    Related
    ENSTTRP00000005279.2, ENSTTRT00000005595.2
    Conserved Domains (1) summary
    pfam05110
    Location:9 → 1217
    AF-4; AF-4 proto-oncoprotein

  10. XM_019926697.2 → XP_019782256.1  AF4/FMR2 family member 1 isoform X9

    UniProtKB/TrEMBL
    A0A2U4AMU7
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1158
    AF-4; AF-4 proto-oncoprotein

  11. XM_019926698.2 → XP_019782257.1  AF4/FMR2 family member 1 isoform X9

    UniProtKB/TrEMBL
    A0A2U4AMU7
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1158
    AF-4; AF-4 proto-oncoprotein

  12. XM_019926700.2 → XP_019782259.1  AF4/FMR2 family member 1 isoform X11

    UniProtKB/TrEMBL
    A0A2U4AN60
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 848
    AF-4; AF-4 proto-oncoprotein

  13. XM_019926701.2 → XP_019782260.1  AF4/FMR2 family member 1 isoform X11

    UniProtKB/TrEMBL
    A0A2U4AN60
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 848
    AF-4; AF-4 proto-oncoprotein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.